Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015805948.1_cds_XP_016494148.1_8588
CDS Infomation

[gene=LOC107813393] [db_xref=GeneID:107813393] [protein=cryptochrome-1-like] [protein_id=XP_016494148.1] [location=join(17829..18141,20411..20632,20851..21557,22418..23096,23262..23278)] [gbkey=CDS]
Sequence

ATGGAGAGCAATTCTAAGACAATTGTGTGGTTTAGGAGGGATTTGAGAATTGAGGATAAT
CCAGCTTTAGCAGCAGCTGCTAGGAATGGGAGTGTATTTCCAGTGTTTATATGGAGTCCT
AAAGAAGAAGGGCAATTTTATCCAGGTAGAGTTTCAAGATGGTGGCTGAAGCAATCTCTT
ATTCACTTGGAACAGTCTTTGAAATCTCTTGGTGCTGAACTTGTGCTGATCAAAGCTCAG
AGTACACTTTCTGCTCTCTTGGACTGCATCGAAGCTGTTGGGGCGACAAAAGTTGTGTAT
AATCATCTATATGATCCTGTTTCACTTGTTCGTGATCACAATATCAAGCAAAAGCTGGGG
GAACTTGGCATATCTGTTCAGAGCTACAATGGGGACTTACTGAATGAACCATGGGAAGTC
TACGACGATGATGGAAAAGTTTTTACTACTTTTGATGCATACTGGGAGAAGTCTTTGCGT
CTCCAAAAAGAACCCGTTTCTCACCTTCCGCCTTGGAAATTAATTCCAGCTGCAGGATCA
GTTAAAATGTGTTCGGTTGAGGAATTGGGACTGGAAAATGAGTCGGAAAAATCTAGTAAC
GCATTACTGGGGAAAGGATGGGCACCAGGTTGGAGCAATGCAGACAAGGCCTTAACAGAG
TTTGTAGAGAACCAACTACTTGCTTACTCAAAGGATAGGCTGAGAGTCGGGGGAAACTCG
ACATCCCTTTTGTCTCCTTATCTTCACTTTGGAGAAGTAAGTGTGAGGAAGGTTTTCAAC
AGTGTGCGTTTGAAGCAGATACTATGGACCAAAGAGGGGAACTCTGTTGGAGACGAGAGT
GCTAGTCTTTACCTTAGAGCTATTGGGCTTCGAGAGTATTCCCGCTATATCTGTTTTAAT
TTCCCATTTACTCATGAAAGATCATTATTGAACAACCTGAAGTTTTTCCCTTGGAATGCT
GATCAGGCCCGTTTTAAGGCATGGCGACAGGGCCGGACTGGTTACCCATTAGTAGATGCA
GGAATGAGAGAGCTTTGGGCAACTGGATGGATTCATAATAAAATACGAGTTATTGTGGCA
AGTTTCTTTGTGAAGTTTTTACTTCTGCCATGGCAATGGGGGATGAAGTACTTTTGGGAT
ACACTTTTGGACGCGGATTTAGAAAGCGATATTATTGGCTGGCAATATATCTCTGGTAGC
TTGCCAGATGGTCATGAACTTGAGCGCCTAGATAACCCAGAGGTTCAAGGATTCAACTAC
GATCCGGAGGGTGAATACGTGAGGCATTGGCTGCCCGAGCTAGCAAGAATGCCAGCTGAA
TGGATCCATCATCCTTGGGATGCACCTCTTACCGTGCTCAAGGCTGCGGGGGTGGAACTC
GGAATGAATTATCCAAACCCTATAATTGATGTAGATGTTGCGAGGGATCGTCTGATGCAA
GCTATATTTATCATGCGAGAAAAAGAAGCAGCTGCAAATGCCGCAGATGCAAATGGAACC
AACGAAGTTGTTTTTGATAACTCTGAAAATGTTGGAGATTCGGTCAATCCAAAGGTTGTA
AAGGGAAAGGTGCCTTGCCCGAGCAGTTCATCTTATGATCAGAGGGTGCCATCAATGCAA
AAGGGGAGCACAAATAAGAAGAGACCAAACCCGGTCGAAGAAGAAAAGAAGTTCAAAGAT
AATTGGCTTAGTTGCAAGATCAAGATTGAAGGGAAGATCTCAAAGGCGGATGATGACTTG
TGCTCGACTGCAGAATCCTCTTCTATGAAAAAGCAAATGACAACCAGCAGAAATTCATTT
TCAGTACCTCAAGCAATTTCCATGTCTTACGACATAAAATCCTTTGATGGTGAAGCATCA
TCACACGTGAAGCTGCAAAATGAAGAAGAGATTGACATGGAAATCAATTCATGCAAAAAT
GGAGCTATTGCAGAATGA

Peptide Sequence

PEP ID

XP_016494148.1
PEP Infomation

PREDICTED: cryptochrome-1-like [Nicotiana tabacum]
Sequence

MESNSKTIVWFRRDLRIEDNPALAAAARNGSVFPVFIWSPKEEGQFYPGRVSRWWLKQSL
IHLEQSLKSLGAELVLIKAQSTLSALLDCIEAVGATKVVYNHLYDPVSLVRDHNIKQKLG
ELGISVQSYNGDLLNEPWEVYDDDGKVFTTFDAYWEKSLRLQKEPVSHLPPWKLIPAAGS
VKMCSVEELGLENESEKSSNALLGKGWAPGWSNADKALTEFVENQLLAYSKDRLRVGGNS
TSLLSPYLHFGEVSVRKVFNSVRLKQILWTKEGNSVGDESASLYLRAIGLREYSRYICFN
FPFTHERSLLNNLKFFPWNADQARFKAWRQGRTGYPLVDAGMRELWATGWIHNKIRVIVA
SFFVKFLLLPWQWGMKYFWDTLLDADLESDIIGWQYISGSLPDGHELERLDNPEVQGFNY
DPEGEYVRHWLPELARMPAEWIHHPWDAPLTVLKAAGVELGMNYPNPIIDVDVARDRLMQ
AIFIMREKEAAANAADANGTNEVVFDNSENVGDSVNPKVVKGKVPCPSSSSYDQRVPSMQ
KGSTNKKRPNPVEEEKKFKDNWLSCKIKIEGKISKADDDLCSTAESSSMKKQMTTSRNSF
SVPQAISMSYDIKSFDGEASSHVKLQNEEEIDMEINSCKNGAIAE

Transcript Sequence

Gene sequence data has not been registered.